CDS

Accession Number TCMCG073C20514
gbkey CDS
Protein Id XP_010545519.1
Location join(1039675..1039710,1040197..1040243,1040514..1040608,1041319..1041399,1041464..1041542,1041959..1042022,1042388..1042542,1042648..1042749,1042847..1042874,1042952..1042983,1043074..1043131,1043367..1043453,1043765..1043821,1044407..1044508,1044607..1044651,1045111..1045188,1045425..1045475,1045556..1045637,1046096..1046169,1046256..1046355,1046493..1046589,1046734..1046823,1046921..1046985,1047110..1047168,1047278..1047354,1047431..1047517,1047795..1047856,1047940..1048001,1048206..1048259,1048460..1048545,1048674..1048705,1048804..1048827,1048912..1049027,1049124..1049204)
Gene LOC104817863
GeneID 104817863
Organism Tarenaya hassleriana

Protein

Length 814aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA268022
db_source XM_010547217.1
Definition PREDICTED: DNA mismatch repair protein MSH5 isoform X3 [Tarenaya hassleriana]

EGGNOG-MAPPER Annotation

COG_category L
Description DNA mismatch repair
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K08741        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000228        [VIEW IN EMBL-EBI]
GO:0000280        [VIEW IN EMBL-EBI]
GO:0000710        [VIEW IN EMBL-EBI]
GO:0000712        [VIEW IN EMBL-EBI]
GO:0000793        [VIEW IN EMBL-EBI]
GO:0000794        [VIEW IN EMBL-EBI]
GO:0000795        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003690        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005694        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006298        [VIEW IN EMBL-EBI]
GO:0006310        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007049        [VIEW IN EMBL-EBI]
GO:0007059        [VIEW IN EMBL-EBI]
GO:0007127        [VIEW IN EMBL-EBI]
GO:0007129        [VIEW IN EMBL-EBI]
GO:0007131        [VIEW IN EMBL-EBI]
GO:0008094        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010777        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016462        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016817        [VIEW IN EMBL-EBI]
GO:0016818        [VIEW IN EMBL-EBI]
GO:0016887        [VIEW IN EMBL-EBI]
GO:0017111        [VIEW IN EMBL-EBI]
GO:0022402        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0022607        [VIEW IN EMBL-EBI]
GO:0030983        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0035825        [VIEW IN EMBL-EBI]
GO:0042623        [VIEW IN EMBL-EBI]
GO:0043073        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044427        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044454        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045132        [VIEW IN EMBL-EBI]
GO:0045143        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048285        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051026        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051304        [VIEW IN EMBL-EBI]
GO:0051307        [VIEW IN EMBL-EBI]
GO:0051321        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0061982        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070192        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0098813        [VIEW IN EMBL-EBI]
GO:0099086        [VIEW IN EMBL-EBI]
GO:0140013        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1903046        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGAGGAAATCGACGAAACAGAGGACCGATCACAGGTTTATATGGCTTGCATTCAACACGGGCGTCGGTTCGTGAATTACTTAATCGGAGTATCTTACTACGACTGTAATATCCGCCAGCTTCATTTGCTTGAATTTTGGGAGGATAGTTGCTCAGAGTTTCCCTTGATTGATATTGTAAAATATCAAGCAAATCCATTGGTCATTTATACAAGCACCAAAAGTGAAGAATCCTTTCTATCAGCTCTACAGCAGAATGATGTAGATGGAACTTGCGAGACTCCCATGGTGAAGCTTGTTAAGAGCTCAACATTCAGCTACGAGCAAGCTTGGCATAGACTGGTATATCTTCGAGTAACAGGGATGGATGATGGATTAAACATCAAGGAAAGGATATGTTATCTAAGTTCAATGATGGACATGGGAAGTGAAGTTCAAGTTCGGGTTGGTGGGGGTCTTCTTGCAATATTAGAGAATGAAAGGATCATAGAAACCCTGGAACAGAAGGAATCTGGGACTGCATCAATTGCAATTGATTCGATCACGGAAGTATCGTTAAACAATTTTCTGAAACTTGACGTGGCTGCTCACGAGGCTTTACAGATATTCCAAATAGATAAACATCCTAGCCATATGGGCATTGGTCGGGCAAAAGAAGGGTTCTCAGTATTTGGGGTGATGAATAAGTGTGCCACGCCAATGGGTAGACGCCTATTAAGAAGCTGGTTTATGAGGCCCATTTTAGATCTTGAACTGTTAGATCATCGTCTCAATGCTATTTCCTTTTTCATTTCTTCAGAAGAGCTAATGACATCTTTGCGCGAGACACTGAAATCTGTGAAGGACATTACCCATCTGCTCAAGAAATTCAACTCCCCGACGTCCCTCTGTACGAGTAAGGATTGGACAGCTTTCTTGAAGAGTATAAGTGCACTCTTGCACGTGAATAAAATATTTGAAGTAGTAGTTTCAGAAACTCTTCGGGAGTATATGAAAAGCTTGCACTTGGACATTGTTGAGAAGGCTGGATTATGCATCAGTACAGAGCTAGCTTATGTATATGAACTGGTGATTGGAGTCATTGACATTAGTAGAAGCAAAGAGAAGAGTTATCAAACAATGGTGAAAGAGGGATTCTGTGCTGAGTTGGATGAGCTCAGGCAAATATATGAGGAGCTGCCAGAGTTCCTTCAGGAGGTTTCGTCAATGGAGTTATCAAAGTTTTCTCATCTGCATAAGGAGAACCTTCCTCCTTGTGTTGTCTATATTCAACAAATCGGTTACCTCATGTGTATCTTTGGAGAAAAACTTGAGGAAACAGAAGTTGAAAGGCTCAATGAATTTGATTTTGCTTTCTCTGATATGGATGGGGAGACTCAACGATTCTTTTATCATACTCCAAAGACACGAGAGTTGGATAACCTTCTTGGAGATATTTATCACAAAATCCTAGATATGGAAAGGGCGATTACCAGGGACTTGCTATCACACGTCCTTTTGTTTTCAGCACATCTGCTGAAGGCCGTTAACTTTGTCGCAGAACTTGATTGCATTTTATCATTGGCTTTTGTAGCGCATCAAAACAACTATGTGAGACCTACTTTGACAACAGAACCAATGCTTGACATACATAACGGAAGGCATGTATTGCAGGAAATGGCTGTTGATACATTTATCCCCAATGACACAAAGATCACTAACGACTGTAGGATTAATATCATTACCGGTCCCAATTATTCAGGGAAGAGCATCTATATAAAGCAGGTAGCTTTAATTGTTTTCCTTTCCCATATCGGAAGTTTTGTGCCGGCAGAGGTCGCAACAGTCGGTCTAACAGATAGGATATTCTGTGCAATGGGAAGCAGATTTATGACTGCAGAACAATCTACATTTATGATTGATCTCCATCAAGTGGGAATGATGCTTAGGCAAGCGACTTCAAGATCTCTGTGTCTCTTGGATGAGTTTGGTAAAGGCACTCTTGCAGAAGATGGAATTGGCTTGCTTGGAGGGACAATTAGTCACTTTGCCTCATTTCATGAGCCGCCAAGGGTTTTGGTATGCACCCACTTGACTGAACTCTTAAACCCAAGTTTCTTGCCTGTGTCTGAGAAGATCAAATTCTACACAATGAGTGTTTTGAGGCCAGAGACGGATTCCAGGAGTATTGAGGATATCATTTTTCTTTATCGGATAGTTCCAGGACACACGCTGCTGAGTTATGGTCTGCATTGTGCATTACTCGCTGGTGTACCGGAGGAAGTCGTAAAGAGAGCAGCGGTGGTATTGGACGGGTTGGAGAACAACGAAGGTGTGGATAGGCTAAGTCATGACAACATTTCATCTCAAGATCAATCATACAAGGACGCCCTTGACAAGTTGCTTGGGTTCGACATTCTTGGAGGCGACATCAACACCTTCTTTCAGGGTCTGTTTTCTTCGTAA
Protein:  
MEEIDETEDRSQVYMACIQHGRRFVNYLIGVSYYDCNIRQLHLLEFWEDSCSEFPLIDIVKYQANPLVIYTSTKSEESFLSALQQNDVDGTCETPMVKLVKSSTFSYEQAWHRLVYLRVTGMDDGLNIKERICYLSSMMDMGSEVQVRVGGGLLAILENERIIETLEQKESGTASIAIDSITEVSLNNFLKLDVAAHEALQIFQIDKHPSHMGIGRAKEGFSVFGVMNKCATPMGRRLLRSWFMRPILDLELLDHRLNAISFFISSEELMTSLRETLKSVKDITHLLKKFNSPTSLCTSKDWTAFLKSISALLHVNKIFEVVVSETLREYMKSLHLDIVEKAGLCISTELAYVYELVIGVIDISRSKEKSYQTMVKEGFCAELDELRQIYEELPEFLQEVSSMELSKFSHLHKENLPPCVVYIQQIGYLMCIFGEKLEETEVERLNEFDFAFSDMDGETQRFFYHTPKTRELDNLLGDIYHKILDMERAITRDLLSHVLLFSAHLLKAVNFVAELDCILSLAFVAHQNNYVRPTLTTEPMLDIHNGRHVLQEMAVDTFIPNDTKITNDCRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPAEVATVGLTDRIFCAMGSRFMTAEQSTFMIDLHQVGMMLRQATSRSLCLLDEFGKGTLAEDGIGLLGGTISHFASFHEPPRVLVCTHLTELLNPSFLPVSEKIKFYTMSVLRPETDSRSIEDIIFLYRIVPGHTLLSYGLHCALLAGVPEEVVKRAAVVLDGLENNEGVDRLSHDNISSQDQSYKDALDKLLGFDILGGDINTFFQGLFSS